Resources

Timema cristinae genome drafts

We will eventually develop a master database and online genome browser for the Timema system. In the meanwhile, genome drafts and gene and TE annotations can be downloaded here.

Timema cristinae genome draft 0.3

Assembly with scaffolds assigned to linkage groups using GBS data from crosses. Published on Rüdiger R.*, M. Muschick*, D. Lindtke*, R. Villoutreix*, A.A. Comeault, T.E. Farkas, K. Lucek, E. Hellen, V. Soria-Carrasco, S.R. Dennis, C.F. de Carvalho, R.J. Safran, C.P. Sandoval, J.L. Feder, R. Gries, B.J. Crespi, G. Gries, Z. Gompert*, and P. Nosil. 2017. Transitions between phases of genomic differentiation during stick-insect speciation. Nature Ecology and Evolution in press.

Timema cristinae genome draft 0.3 (fasta format sequence)

Timema cristinae genome draft 0.2

Assembly with scaffolds assigned to linkage groups using GBS data from crosses. Published on Soria-Carrasco, V., Z. Gompert, A.A. Comeault, T.E. Farkas, T.L. Parchman, J.S. Johnson, C.A. Buerkle, J.L. Feder, J. Bast, T. Schwander, S.P. Egan, B.J. Crespi, and P. Nosil. 2014. Stick insect genomes reveal natural selection’s role in parallel speciation. Science 344: 738-742.

Timema cristinae genome draft 0.2 (fasta format sequence)

Timema cristinae structural annotations (one gff file for each scaffold)

Timema cristinae functional annotations (predicted proteins, one gff file for each scaffold)

Timema cristinae genome draft 0.1

Initial assembly using ALLPATHS-LG (without linkage groups). Published on Gompert, Z.,­­ A.A. Comeault, T.E. Farkas, J.L. Feder, T.L. Parchman, C.A. Buerkle, and P. Nosil. 2014. Experimental evidence for ecological selection on genome variation in the wild. Ecology Letters 17: 369-379.

Timema cristinae genome draft 0.1 (fasta format sequence)

This project was archived as NCBI BioProject PRJNA357256 and raw data can be found in NCBI SRA.


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